Citations

Author

Steffi LaZerte

Published

July 4, 2024

This section contains citations that we should remember to include.

eBird Status and Trends

In addition to citing the ebirdst package (below). We also have to cite the eBird data itself.

eBird data requires attributions, citations, and disclaimers

For the most up-to-date instructions see Part 2: https://science.ebird.org/en/status-and-trends/products-access-terms-of-use

Packages

You probably only need to cite motus, ebirdst, and possibly the tidyverse, but you should keep track of the packages used and their versions (see General Info, note that if an workflow step was updated separately, see the most up-to-date package versions under that pages “General Info”).

Unfortuntaly journals do not often want you to cite general data manipulation and visualization packages (which is most of what we use).

motus

Birds Canada (2024). motus: Fetch and use data from the Motus Wildlife Tracking System. https://motusWTS.github.io/motus/.

ebirdst (for access to range maps)

Please cite the eBird Status and Trends data using: 
  Fink, D., T. Auer, A. Johnston, M. Strimas-Mackey, S. Ligocki, O. Robinson, 
  W. Hochachka, L. Jaromczyk, C. Crowley, K. Dunham, A. Stillman, I. Davies, 
  A. Rodewald, V. Ruiz-Gutierrez, C. Wood. 2023.
  eBird Status and Trends, Data Version: 2022; Released: 2023. Cornell Lab of
  Ornithology, Ithaca, New York. https://doi.org/10.2173/ebirdst.2022

This version of the package provides access to the 2022 version of the eBird
Status and Trends Data Products. Access to the 2022 data will be provided 
until November 2024 when it will be replaced by the 2023 data. At that 
point, you will be required to update this R package and transition to using 
the new data.

tidyverse (for general data management and figures)

Wickham H, Averick M, Bryan J, Chang W, McGowan LD, François R, Grolemund G, Hayes A, Henry L, Hester J, Kuhn M, Pedersen TL, Miller E, Bache SM, Müller K, Ooms J, Robinson D, Seidel DP, Spinu V, Takahashi K, Vaughan D, Wilke C, Woo K, Yutani H (2019). “Welcome to the tidyverse.” Journal of Open Source Software, 4(43), 1686. doi:10.21105/joss.01686 https://doi.org/10.21105/joss.01686.

Maps

Note that map tiles should be attributed. Best is to include that attribution in the figure itself, but you can also include it in the caption.

We use CARTO light tiles.

General Info

devtools::session_info()

─ Session info ───────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.4.0 (2024-04-24)
 os       Ubuntu 22.04.4 LTS
 system   x86_64, linux-gnu
 ui       X11
 language en_CA:en
 collate  en_CA.UTF-8
 ctype    en_CA.UTF-8
 tz       America/Winnipeg
 date     2024-07-04
 pandoc   3.1.1 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)

─ Packages ───────────────────────────────────────────────────────────────────
 ! package     * version  date (UTC) lib source
 P cachem        1.1.0    2024-05-16 [?] CRAN (R 4.4.0)
 P cli           3.6.2    2023-12-11 [?] CRAN (R 4.4.0)
 P devtools      2.4.5    2022-10-11 [?] CRAN (R 4.4.0)
 P digest        0.6.35   2024-03-11 [?] CRAN (R 4.4.0)
 P ebirdst     * 3.2022.3 2024-03-05 [?] CRAN (R 4.4.0)
 P ellipsis      0.3.2    2021-04-29 [?] CRAN (R 4.4.0)
 P evaluate      0.23     2023-11-01 [?] CRAN (R 4.4.0)
 P fastmap       1.2.0    2024-05-15 [?] CRAN (R 4.4.0)
 P fs            1.6.4    2024-04-25 [?] CRAN (R 4.4.0)
 P glue          1.7.0    2024-01-09 [?] CRAN (R 4.4.0)
 P htmltools     0.5.8.1  2024-04-04 [?] CRAN (R 4.4.0)
 P htmlwidgets   1.6.4    2023-12-06 [?] CRAN (R 4.4.0)
 P httpuv        1.6.15   2024-03-26 [?] CRAN (R 4.4.0)
 P jsonlite      1.8.8    2023-12-04 [?] CRAN (R 4.4.0)
 P knitr         1.47     2024-05-29 [?] CRAN (R 4.4.0)
 P later         1.3.2    2023-12-06 [?] CRAN (R 4.4.0)
 P lifecycle     1.0.4    2023-11-07 [?] CRAN (R 4.4.0)
 P magrittr      2.0.3    2022-03-30 [?] CRAN (R 4.4.0)
 P memoise       2.0.1    2021-11-26 [?] CRAN (R 4.4.0)
 P mime          0.12     2021-09-28 [?] CRAN (R 4.4.0)
 P miniUI        0.1.1.1  2018-05-18 [?] CRAN (R 4.4.0)
 P pkgbuild      1.4.4    2024-03-17 [?] CRAN (R 4.4.0)
 P pkgload       1.3.4    2024-01-16 [?] CRAN (R 4.4.0)
 P profvis       0.3.8    2023-05-02 [?] CRAN (R 4.4.0)
 P promises      1.3.0    2024-04-05 [?] CRAN (R 4.4.0)
 P purrr         1.0.2    2023-08-10 [?] CRAN (R 4.4.0)
 P R6            2.5.1    2021-08-19 [?] CRAN (R 4.4.0)
 P Rcpp          1.0.12   2024-01-09 [?] CRAN (R 4.4.0)
 P remotes       2.5.0    2024-03-17 [?] CRAN (R 4.4.0)
   renv          1.0.7    2024-04-11 [1] CRAN (R 4.4.0)
 P rlang         1.1.3    2024-01-10 [?] CRAN (R 4.4.0)
 P rmarkdown     2.27     2024-05-17 [?] CRAN (R 4.4.0)
 P rstudioapi    0.16.0   2024-03-24 [?] CRAN (R 4.4.0)
 P sessioninfo   1.2.2    2021-12-06 [?] CRAN (R 4.4.0)
 P shiny         1.8.1.1  2024-04-02 [?] CRAN (R 4.4.0)
 P stringi       1.8.4    2024-05-06 [?] CRAN (R 4.4.0)
 P stringr       1.5.1    2023-11-14 [?] CRAN (R 4.4.0)
 P urlchecker    1.0.1    2021-11-30 [?] CRAN (R 4.4.0)
 P usethis       2.2.3    2024-02-19 [?] CRAN (R 4.4.0)
 P vctrs         0.6.5    2023-12-01 [?] CRAN (R 4.4.0)
 P xfun          0.44     2024-05-15 [?] CRAN (R 4.4.0)
 P xtable        1.8-4    2019-04-21 [?] CRAN (R 4.4.0)
 P yaml          2.3.8    2023-12-11 [?] CRAN (R 4.4.0)

 [1] /home/steffi/Projects/Business/Barbara Frei/urban_motus/renv/library/linux-ubuntu-jammy/R-4.4/x86_64-pc-linux-gnu
 [2] /home/steffi/.cache/R/renv/sandbox/linux-ubuntu-jammy/R-4.4/x86_64-pc-linux-gnu/9a444a72

 P ── Loaded and on-disk path mismatch.

──────────────────────────────────────────────────────────────────────────────